borst2021

Single-cell data analysis reports for Borst et al. (2021)

• Import data from Cellranger
• Single-cell quality control
• Normalize data
• Annotate cell-types
• Annotate NK/T cells
• NKG2a
  • Prepare DE analysis and plot marker genes
    • Plots
  • DE analysis
    • Plots and full list of DE genes

Source code

A reproducible Nextflow pipeline generating the above results is available from our GitHub repository.

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